{
  "_id": "6a4ca94207c3fd5c3260f09b",
  "Package": "heattree",
  "Type": "Package",
  "Title": "A Self-Contained Widget for Interactive Phylogenetic Tree\nVisualization",
  "Version": "0.3.1",
  "Authors@R": "c(\nperson(\n\"Zachary\", \"Foster\",\nemail = \"zacharyfoster1989@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-5075-0948\")\n),\nperson(\n\"Niklaus\", \"Grunwald\",\nemail = \"grunwaln@oregonstate.edu\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-1656-7602\")\n),\nperson(\"USDA Agricultural Research Service\", role = c(\"fnd\")\n)\n)",
  "Maintainer": "Zachary Foster <zacharyfoster1989@gmail.com>",
  "Description": "Creates self-contained widgets for interactive\nphylogenetic tree visualization. This package wraps the\n'JavaScript' 'heat-tree' package using the 'htmlwidgets' R\npackage.",
  "URL": "https://grunwaldlab.github.io/heattree/",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.3",
  "Config/Needs/website": "rmarkdown",
  "Roxygen": "list(markdown = TRUE)",
  "Config/pak/sysreqs": "cmake make libuv1-dev",
  "Repository": "https://grunwaldlab.r-universe.dev",
  "Date/Publication": "2026-05-08 20:43:30 UTC",
  "RemoteUrl": "https://github.com/grunwaldlab/heattree",
  "RemoteRef": "HEAD",
  "RemoteSha": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-07 07:19:50 UTC",
    "User": "root"
  },
  "Author": "Zachary Foster [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-5075-0948>),\nNiklaus Grunwald [aut] (ORCID: <https://orcid.org/0000-0003-1656-7602>),\nUSDA Agricultural Research Service [fnd]",
  "_user": "grunwaldlab",
  "_type": "src",
  "_file": "heattree_0.3.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/b8e6a0f6829da1d759956290c11ce854f21de63d81aab05253a0e7ade269371d",
  "_filesize": 490262,
  "_sha256": "b8e6a0f6829da1d759956290c11ce854f21de63d81aab05253a0e7ade269371d",
  "_expires": "2026-10-15T07:22:40.000Z",
  "_created": "2026-07-07T07:19:50.000Z",
  "_published": "2026-07-07T07:22:42.317Z",
  "_jobs": [
    {
      "job": 85558926831,
      "time": 138,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8130709953"
    },
    {
      "job": 85558926835,
      "time": 130,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8130706987"
    },
    {
      "job": 85558926850,
      "time": 104,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8130697663"
    },
    {
      "job": 85558926828,
      "time": 79,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8130688958"
    },
    {
      "job": 85558468889,
      "time": 164,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8130661272"
    },
    {
      "job": 85558926812,
      "time": 134,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8130708364"
    },
    {
      "job": 85558926900,
      "time": 71,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8130686759"
    },
    {
      "job": 85558926878,
      "time": 89,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8130692398"
    },
    {
      "job": 85558926874,
      "time": 64,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8130684047"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/28848660244",
  "_status": "success",
  "_upstream": "https://github.com/grunwaldlab/heattree",
  "_commit": {
    "id": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
    "author": "Niklaus Grunwald <grunwaln@science.oregonstate.edu>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Revise citation in README.md\n\nUpdated citation year and added DOI link.",
    "time": 1778273010
  },
  "_maintainer": {
    "name": "Zachary Foster",
    "email": "zacharyfoster1989@gmail.com",
    "login": "zachary-foster",
    "description": "",
    "uuid": 6090555,
    "orcid": "0000-0002-5075-0948"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "ape",
      "role": "Imports"
    },
    {
      "package": "htmlwidgets",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    }
  ],
  "_owner": "grunwaldlab",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-02",
      "n": 10
    },
    {
      "week": "2026-03",
      "n": 2
    },
    {
      "week": "2026-04",
      "n": 1
    },
    {
      "week": "2026-07",
      "n": 1
    },
    {
      "week": "2026-10",
      "n": 1
    },
    {
      "week": "2026-11",
      "n": 3
    },
    {
      "week": "2026-12",
      "n": 1
    },
    {
      "week": "2026-14",
      "n": 5
    },
    {
      "week": "2026-15",
      "n": 5
    },
    {
      "week": "2026-16",
      "n": 3
    },
    {
      "week": "2026-17",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 3
    },
    {
      "week": "2026-19",
      "n": 3
    }
  ],
  "_tags": [
    {
      "name": "v0.1.2",
      "date": "2026-01-09"
    },
    {
      "name": "v0.2.1",
      "date": "2026-01-16"
    },
    {
      "name": "v0.3.1",
      "date": "2026-04-16"
    }
  ],
  "_stars": 3,
  "_contributors": [
    {
      "user": "zachary-foster",
      "count": 38,
      "uuid": 6090555
    },
    {
      "user": "grunwald",
      "count": 7,
      "uuid": 3679546
    }
  ],
  "_userbio": {
    "uuid": 5933307,
    "type": "organization",
    "name": "Grunwald lab",
    "followers": 48
  },
  "_downloads": {
    "count": 188,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/heattree"
  },
  "_devurl": "https://github.com/grunwaldlab/heattree",
  "_pkgdown": "https://grunwaldlab.github.io/heattree/",
  "_searchresults": 6,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/heattree.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/grunwaldlab/heattree",
  "_realowner": "grunwaldlab",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.3.1",
      "date": "2026-05-04"
    }
  ],
  "_exports": [
    "heat_tree",
    "heat_treeOutput",
    "renderheat_tree"
  ],
  "_datasets": [
    {
      "name": "bansal_2021_metadata",
      "title": "Isolate metadata from Bansal et al. 2021",
      "object": "bansal_2021_metadata",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Strain",
        "Genome size",
        "CDS",
        "Genome status",
        "Source/Host",
        "Host taxonomy",
        "Lifestyle",
        "Location",
        "Isolation year",
        "GC%",
        "# tRNA",
        "Species",
        "Tree ID",
        "Completeness",
        "Contamination"
      ],
      "rows": 76,
      "table": true,
      "tojson": true
    },
    {
      "name": "bansal_2021_tree",
      "title": "A phylogeny from Bansal et al. 2021",
      "object": "bansal_2021_tree",
      "class": [
        "phylo"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "weisberg_2020_beast",
      "title": "A BEAST phylogeny from Weisberg et al. 2020",
      "object": "weisberg_2020_beast",
      "class": [
        "phylo"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "weisberg_2020_metadata",
      "title": "Isolate metadata from Weisberg et al. 2020",
      "object": "weisberg_2020_metadata",
      "class": [
        "data.frame"
      ],
      "fields": [
        "strain",
        "species",
        "genus",
        "genomospecies",
        "host",
        "host_type",
        "opine_type",
        "year_isolated",
        "plasmid_class",
        "plasmid_type",
        "ncbi_accession",
        "mlsa_node_id",
        "beast_node_id"
      ],
      "rows": 148,
      "table": true,
      "tojson": true
    },
    {
      "name": "weisberg_2020_mlsa",
      "title": "A MLSA phylogeny from Weisberg et al. 2020",
      "object": "weisberg_2020_mlsa",
      "class": [
        "phylo"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "bansal_2021_metadata",
      "title": "Isolate metadata from Bansal et al. 2021",
      "topics": [
        "bansal_2021_metadata"
      ]
    },
    {
      "page": "bansal_2021_tree",
      "title": "A phylogeny from Bansal et al. 2021",
      "topics": [
        "bansal_2021_tree"
      ]
    },
    {
      "page": "heat_tree",
      "title": "Create an interactive phylogenetic tree",
      "topics": [
        "heat_tree"
      ]
    },
    {
      "page": "heat_tree-shiny",
      "title": "Shiny bindings for heat_tree",
      "topics": [
        "heat_tree-shiny",
        "heat_treeOutput",
        "renderheat_tree"
      ]
    },
    {
      "page": "weisberg_2020_beast",
      "title": "A BEAST phylogeny from Weisberg et al. 2020",
      "topics": [
        "weisberg_2020_beast"
      ]
    },
    {
      "page": "weisberg_2020_metadata",
      "title": "Isolate metadata from Weisberg et al. 2020",
      "topics": [
        "weisberg_2020_metadata"
      ]
    },
    {
      "page": "weisberg_2020_mlsa",
      "title": "A MLSA phylogeny from Weisberg et al. 2020",
      "topics": [
        "weisberg_2020_mlsa"
      ]
    }
  ],
  "_readme": "https://github.com/grunwaldlab/heattree/raw/HEAD/README.md",
  "_rundeps": [
    "ape",
    "base64enc",
    "bslib",
    "cachem",
    "cli",
    "digest",
    "evaluate",
    "fastmap",
    "fontawesome",
    "fs",
    "highr",
    "htmltools",
    "htmlwidgets",
    "jquerylib",
    "jsonlite",
    "knitr",
    "lattice",
    "lifecycle",
    "memoise",
    "mime",
    "nlme",
    "R6",
    "rappdirs",
    "Rcpp",
    "rlang",
    "rmarkdown",
    "sass",
    "tinytex",
    "xfun",
    "yaml"
  ],
  "_score": 4.290034611362518,
  "_indexed": true,
  "_nocasepkg": "heattree",
  "_universes": [
    "grunwaldlab",
    "zachary-foster"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.3.1",
      "date": "2026-07-07T07:22:13.000Z",
      "distro": "resolute",
      "commit": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
      "fileid": "https://r2.ropensci.org/0b17cbca657ebf84e2cc4f385ab73f3f1788fa18e153b93ed267e1505f987864",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/28848660244"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.3.1",
      "date": "2026-07-07T07:22:06.000Z",
      "distro": "resolute",
      "commit": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
      "fileid": "https://r2.ropensci.org/b9492fcbeff7a8c9b5f552c2d6def5f238e88a67442eaf4a202df352d22d6f58",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/28848660244"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.3.1",
      "date": "2026-07-07T07:21:35.000Z",
      "commit": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
      "fileid": "https://r2.ropensci.org/930dae162b7616c85d31a9da138672d30f27f00bad5cc7a56d670886d6a9dbcb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/28848660244"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.3.1",
      "date": "2026-07-07T07:21:12.000Z",
      "commit": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
      "fileid": "https://r2.ropensci.org/f2a66b0ae8000fcc662f35689842bc0acd17f80e710729e394c22449d06dfd0f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/28848660244"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.3.1",
      "date": "2026-07-07T07:22:19.000Z",
      "commit": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
      "fileid": "https://r2.ropensci.org/2c880eb103b929be588754abd7717d36606b649d30dfbcb0f1e7fe5724866209",
      "status": "success",
      "buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/28848660244"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.3.1",
      "date": "2026-07-07T07:21:00.000Z",
      "commit": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
      "fileid": "https://r2.ropensci.org/c88ca6150cdda88ca5a74b868aed004c695f1168b4ce846b1f32230a918c4a8c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/28848660244"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.3.1",
      "date": "2026-07-07T07:21:18.000Z",
      "commit": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
      "fileid": "https://r2.ropensci.org/7386cf7f7ac319fcb5737b722575abdea89d58e94b612119ba62ca2de9631a69",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/28848660244"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.3.1",
      "date": "2026-07-07T07:20:56.000Z",
      "commit": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
      "fileid": "https://r2.ropensci.org/f633a0a34e2fe89f4ac48c8aee07b66646479163dd72e63322fcb3b87d454a82",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/28848660244"
    }
  ]
}