{
  "_id": "6a105d26acfb0bcc41ca480d",
  "Package": "heattree",
  "Type": "Package",
  "Title": "A Self-Contained Widget for Interactive Phylogenetic Tree\nVisualization",
  "Version": "0.3.1",
  "Authors@R": "c(\nperson(\n\"Zachary\", \"Foster\",\nemail = \"zacharyfoster1989@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-5075-0948\")\n),\nperson(\n\"Niklaus\", \"Grunwald\",\nemail = \"grunwaln@oregonstate.edu\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-1656-7602\")\n),\nperson(\"USDA Agricultural Research Service\", role = c(\"fnd\")\n)\n)",
  "Maintainer": "Zachary Foster <zacharyfoster1989@gmail.com>",
  "Description": "Creates self-contained widgets for interactive\nphylogenetic tree visualization. This package wraps the\n'JavaScript' 'heat-tree' package using the 'htmlwidgets' R\npackage.",
  "URL": "https://grunwaldlab.github.io/heattree/",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.3",
  "Config/Needs/website": "rmarkdown",
  "Roxygen": "list(markdown = TRUE)",
  "Config/pak/sysreqs": "cmake make libuv1-dev",
  "Repository": "https://grunwaldlab.r-universe.dev",
  "Date/Publication": "2026-05-08 20:43:30 UTC",
  "RemoteUrl": "https://github.com/grunwaldlab/heattree",
  "RemoteRef": "HEAD",
  "RemoteSha": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-08 21:09:39 UTC",
    "User": "root"
  },
  "Author": "Zachary Foster [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-5075-0948>),\nNiklaus Grunwald [aut] (ORCID: <https://orcid.org/0000-0003-1656-7602>),\nUSDA Agricultural Research Service [fnd]",
  "MD5sum": "42d81a4e60b67902bf3a183a62f80004",
  "_user": "grunwaldlab",
  "_type": "src",
  "_file": "heattree_0.3.1.tar.gz",
  "_fileid": "3faaeaa1feefc82b32b848159a0d2512a720a9ed9e3634b536390c2f7e037e32",
  "_filesize": 487885,
  "_sha256": "3faaeaa1feefc82b32b848159a0d2512a720a9ed9e3634b536390c2f7e037e32",
  "_created": "2026-05-08T21:09:39.000Z",
  "_published": "2026-05-22T13:41:58.249Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77391565751,
      "time": 144,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6888899789"
    },
    {
      "job": 77391565861,
      "time": 126,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6888895567"
    },
    {
      "job": 77391565814,
      "time": 82,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6888882302"
    },
    {
      "job": 77391565609,
      "time": 79,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6888881384"
    },
    {
      "job": 77391565265,
      "time": 185,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6888859241"
    },
    {
      "job": 77391564968,
      "time": 108,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7161946255"
    },
    {
      "job": 77391565472,
      "time": 134,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6888895669"
    },
    {
      "job": 77391565534,
      "time": 79,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6888882021"
    },
    {
      "job": 77391565877,
      "time": 79,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6888959019"
    }
  ],
  "_buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/25579557845",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/grunwaldlab/heattree",
  "_commit": {
    "id": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
    "author": "Niklaus Grunwald <grunwaln@science.oregonstate.edu>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Revise citation in README.md\n\nUpdated citation year and added DOI link.",
    "time": 1778273010
  },
  "_maintainer": {
    "name": "Zachary Foster",
    "email": "zacharyfoster1989@gmail.com",
    "login": "zachary-foster",
    "uuid": 6090555,
    "orcid": "0000-0002-5075-0948"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "ape",
      "role": "Imports"
    },
    {
      "package": "htmlwidgets",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    }
  ],
  "_owner": "grunwaldlab",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-02",
      "n": 10
    },
    {
      "week": "2026-03",
      "n": 2
    },
    {
      "week": "2026-04",
      "n": 1
    },
    {
      "week": "2026-07",
      "n": 1
    },
    {
      "week": "2026-10",
      "n": 1
    },
    {
      "week": "2026-11",
      "n": 3
    },
    {
      "week": "2026-12",
      "n": 1
    },
    {
      "week": "2026-14",
      "n": 5
    },
    {
      "week": "2026-15",
      "n": 5
    },
    {
      "week": "2026-16",
      "n": 3
    },
    {
      "week": "2026-17",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 3
    },
    {
      "week": "2026-19",
      "n": 3
    }
  ],
  "_tags": [
    {
      "name": "v0.1.2",
      "date": "2026-01-09"
    },
    {
      "name": "v0.2.1",
      "date": "2026-01-16"
    },
    {
      "name": "v0.3.1",
      "date": "2026-04-16"
    }
  ],
  "_stars": 2,
  "_contributors": [
    {
      "user": "zachary-foster",
      "count": 38,
      "uuid": 6090555
    },
    {
      "user": "grunwald",
      "count": 7,
      "uuid": 3679546
    }
  ],
  "_userbio": {
    "uuid": 5933307,
    "type": "organization",
    "name": "Grunwald lab"
  },
  "_downloads": {
    "count": 49,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/heattree"
  },
  "_devurl": "https://github.com/grunwaldlab/heattree",
  "_pkgdown": "https://grunwaldlab.github.io/heattree/",
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/heattree.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/grunwaldlab/heattree",
  "_realowner": "grunwaldlab",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.3.1",
      "date": "2026-05-04"
    }
  ],
  "_exports": [
    "heat_tree",
    "heat_treeOutput",
    "renderheat_tree"
  ],
  "_datasets": [
    {
      "name": "bansal_2021_metadata",
      "title": "Isolate metadata from Bansal et al. 2021",
      "object": "bansal_2021_metadata",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Strain",
        "Genome size",
        "CDS",
        "Genome status",
        "Source/Host",
        "Host taxonomy",
        "Lifestyle",
        "Location",
        "Isolation year",
        "GC%",
        "# tRNA",
        "Species",
        "Tree ID",
        "Completeness",
        "Contamination"
      ],
      "rows": 76,
      "table": true,
      "tojson": true
    },
    {
      "name": "bansal_2021_tree",
      "title": "A phylogeny from Bansal et al. 2021",
      "object": "bansal_2021_tree",
      "class": [
        "phylo"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "weisberg_2020_beast",
      "title": "A BEAST phylogeny from Weisberg et al. 2020",
      "object": "weisberg_2020_beast",
      "class": [
        "phylo"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "weisberg_2020_metadata",
      "title": "Isolate metadata from Weisberg et al. 2020",
      "object": "weisberg_2020_metadata",
      "class": [
        "data.frame"
      ],
      "fields": [
        "strain",
        "species",
        "genus",
        "genomospecies",
        "host",
        "host_type",
        "opine_type",
        "year_isolated",
        "plasmid_class",
        "plasmid_type",
        "ncbi_accession",
        "mlsa_node_id",
        "beast_node_id"
      ],
      "rows": 148,
      "table": true,
      "tojson": true
    },
    {
      "name": "weisberg_2020_mlsa",
      "title": "A MLSA phylogeny from Weisberg et al. 2020",
      "object": "weisberg_2020_mlsa",
      "class": [
        "phylo"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "bansal_2021_metadata",
      "title": "Isolate metadata from Bansal et al. 2021",
      "topics": [
        "bansal_2021_metadata"
      ]
    },
    {
      "page": "bansal_2021_tree",
      "title": "A phylogeny from Bansal et al. 2021",
      "topics": [
        "bansal_2021_tree"
      ]
    },
    {
      "page": "heat_tree",
      "title": "Create an interactive phylogenetic tree",
      "topics": [
        "heat_tree"
      ]
    },
    {
      "page": "heat_tree-shiny",
      "title": "Shiny bindings for heat_tree",
      "topics": [
        "heat_tree-shiny",
        "heat_treeOutput",
        "renderheat_tree"
      ]
    },
    {
      "page": "weisberg_2020_beast",
      "title": "A BEAST phylogeny from Weisberg et al. 2020",
      "topics": [
        "weisberg_2020_beast"
      ]
    },
    {
      "page": "weisberg_2020_metadata",
      "title": "Isolate metadata from Weisberg et al. 2020",
      "topics": [
        "weisberg_2020_metadata"
      ]
    },
    {
      "page": "weisberg_2020_mlsa",
      "title": "A MLSA phylogeny from Weisberg et al. 2020",
      "topics": [
        "weisberg_2020_mlsa"
      ]
    }
  ],
  "_readme": "https://github.com/grunwaldlab/heattree/raw/HEAD/README.md",
  "_rundeps": [
    "ape",
    "base64enc",
    "bslib",
    "cachem",
    "cli",
    "digest",
    "evaluate",
    "fastmap",
    "fontawesome",
    "fs",
    "highr",
    "htmltools",
    "htmlwidgets",
    "jquerylib",
    "jsonlite",
    "knitr",
    "lattice",
    "lifecycle",
    "memoise",
    "mime",
    "nlme",
    "R6",
    "rappdirs",
    "Rcpp",
    "rlang",
    "rmarkdown",
    "sass",
    "tinytex",
    "xfun",
    "yaml"
  ],
  "_score": 4.113943352306837,
  "_indexed": true,
  "_nocasepkg": "heattree",
  "_universes": [
    "grunwaldlab",
    "zachary-foster"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.3.1",
      "date": "2026-05-08T21:12:13.000Z",
      "distro": "noble",
      "commit": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
      "fileid": "c787496bf575ca5f0058f3653b272a17055f2d4cc446a13de7db2693f47a1913",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/25579557845"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.3.1",
      "date": "2026-05-08T21:11:59.000Z",
      "distro": "noble",
      "commit": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
      "fileid": "3520d5ee5e17e5aaf44d4307704342ecbae9e4d32dfa235a4ddfc013ed618075",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/25579557845"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.3.1",
      "date": "2026-05-08T21:11:10.000Z",
      "commit": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
      "fileid": "4518ea270375be683af0d4bd32096f998fe6c4ad715a6537e9653284c128eeab",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/25579557845"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.3.1",
      "date": "2026-05-08T21:11:07.000Z",
      "commit": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
      "fileid": "17e316bd6285415b3ae5f01f7bf1984f73a0d2cd0198a091c6c141d94bdd2b55",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/25579557845"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.3.1",
      "date": "2026-05-08T21:11:55.000Z",
      "commit": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
      "fileid": "07853a6a8e55d132f793e6719dc4250a8e7415cc3aa2d4940d86954267697cee",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/25579557845"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.3.1",
      "date": "2026-05-08T21:11:03.000Z",
      "commit": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
      "fileid": "512d1317e2c7ed4f8bf26da595b595e035fad265d143f72963801828e6a08bbe",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/25579557845"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.3.1",
      "date": "2026-05-08T21:16:00.000Z",
      "commit": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
      "fileid": "39d9cecf2fb267f9abcd8de191c43276f27e6f87bcbc7e7952920e95ad62d5e3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/25579557845"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.3.1",
      "date": "2026-05-22T13:41:44.000Z",
      "commit": "ae7b4032d807b9837698396fbdbd2d8b674ac953",
      "fileid": "3d2e1256d554c88789fe02a895ebf0aff2e94062f5439323e936127109509414",
      "status": "success",
      "buildurl": "https://github.com/r-universe/grunwaldlab/actions/runs/25579557845"
    }
  ]
}