poppr - Genetic Analysis of Populations with Mixed Reproduction
Population genetic analyses for hierarchical analysis of partially clonal populations built upon the architecture of the 'adegenet' package. Originally described in Kamvar, Tabima, and Grünwald (2014) <doi:10.7717/peerj.281> with version 2.0 described in Kamvar, Brooks, and Grünwald (2015) <doi:10.3389/fgene.2015.00208>.
Last updated 6 months ago
clonalitygenetic-analysisgenetic-distancesminimum-spanning-networksmultilocus-genotypesmultilocus-lineagespopulation-geneticspopulations
10.67 score 68 stars 576 scripts 4.6k downloadsmetacoder - Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data
A set of tools for parsing, manipulating, and graphing data classified by a hierarchy (e.g. a taxonomy).
Last updated 9 months ago
community-diversityhierarchicalmetabarcodingpcrtaxonomytrees
9.17 score 136 stars 314 scripts 204 downloadsezec - Easy Interface to Effective Concentration Calculations
Because fungicide resistance is an important phenotypic trait for fungi and oomycetes, it is necessary to have a standardized method of statistically analyzing the Effective Concentration (EC) values. This package is designed for those who are not terribly familiar with R to be able to analyze and plot an entire set of isolates using the 'drc' package.
Last updated 8 years ago
3.70 score 1 stars 6 scripts 183 downloads